{"id":2955,"date":"2022-03-22T22:48:14","date_gmt":"2022-03-22T22:48:14","guid":{"rendered":"https:\/\/recomb2022.net\/?page_id=2955"},"modified":"2022-05-23T17:18:36","modified_gmt":"2022-05-24T00:18:36","slug":"program","status":"publish","type":"page","link":"https:\/\/recomb2022.net\/program\/","title":{"rendered":"Program"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"2955\" class=\"elementor elementor-2955\">\n\t\t\t\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-458378f4 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"458378f4\" data-element_type=\"section\" data-settings=\"{&quot;background_background&quot;:&quot;classic&quot;}\">\n\t\t\t\t\t\t\t<div class=\"elementor-background-overlay\"><\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-39b20262\" data-id=\"39b20262\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t\t\t<div class=\"elementor-element elementor-element-82ee25b elementor-position-top elementor-vertical-align-top elementor-widget elementor-widget-image-box\" data-id=\"82ee25b\" data-element_type=\"widget\" data-widget_type=\"image-box.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t<style>\/*! elementor - v3.7.2 - 21-08-2022 *\/\n.elementor-widget-image-box .elementor-image-box-content{width:100%}@media (min-width:768px){.elementor-widget-image-box.elementor-position-left .elementor-image-box-wrapper,.elementor-widget-image-box.elementor-position-right .elementor-image-box-wrapper{display:-webkit-box;display:-ms-flexbox;display:flex}.elementor-widget-image-box.elementor-position-right .elementor-image-box-wrapper{text-align:right;-webkit-box-orient:horizontal;-webkit-box-direction:reverse;-ms-flex-direction:row-reverse;flex-direction:row-reverse}.elementor-widget-image-box.elementor-position-left .elementor-image-box-wrapper{text-align:left;-webkit-box-orient:horizontal;-webkit-box-direction:normal;-ms-flex-direction:row;flex-direction:row}.elementor-widget-image-box.elementor-position-top .elementor-image-box-img{margin:auto}.elementor-widget-image-box.elementor-vertical-align-top .elementor-image-box-wrapper{-webkit-box-align:start;-ms-flex-align:start;align-items:flex-start}.elementor-widget-image-box.elementor-vertical-align-middle .elementor-image-box-wrapper{-webkit-box-align:center;-ms-flex-align:center;align-items:center}.elementor-widget-image-box.elementor-vertical-align-bottom .elementor-image-box-wrapper{-webkit-box-align:end;-ms-flex-align:end;align-items:flex-end}}@media (max-width:767px){.elementor-widget-image-box .elementor-image-box-img{margin-left:auto!important;margin-right:auto!important;margin-bottom:15px}}.elementor-widget-image-box .elementor-image-box-img{display:inline-block}.elementor-widget-image-box .elementor-image-box-title a{color:inherit}.elementor-widget-image-box .elementor-image-box-wrapper{text-align:center}.elementor-widget-image-box .elementor-image-box-description{margin:0}<\/style><div class=\"elementor-image-box-wrapper\"><div class=\"elementor-image-box-content\"><h2 class=\"elementor-image-box-title\">RECOMB 2022 <\/h2><p class=\"elementor-image-box-description\">The 26th Annual International Conference on Research in Computational Molecular Biology<br>La Jolla, USA, May 22-25, 2022<\/p><\/div><\/div>\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-f75cc93 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"f75cc93\" data-element_type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-bde1229\" data-id=\"bde1229\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t\t\t<div class=\"elementor-element elementor-element-ab42ea0 elementor-widget elementor-widget-spacer\" data-id=\"ab42ea0\" data-element_type=\"widget\" data-widget_type=\"spacer.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t<style>\/*! elementor - v3.7.2 - 21-08-2022 *\/\n.elementor-column .elementor-spacer-inner{height:var(--spacer-size)}.e-container{--container-widget-width:100%}.e-container>.elementor-widget-spacer{width:var(--container-widget-width,var(--spacer-size));-ms-flex-item-align:stretch;align-self:stretch;-ms-flex-negative:0;flex-shrink:0}.e-container>.elementor-widget-spacer>.elementor-widget-container,.e-container>.elementor-widget-spacer>.elementor-widget-container>.elementor-spacer{height:100%}.e-container>.elementor-widget-spacer>.elementor-widget-container>.elementor-spacer>.elementor-spacer-inner{height:var(--container-widget-height,var(--spacer-size))}<\/style>\t\t<div class=\"elementor-spacer\">\n\t\t\t<div class=\"elementor-spacer-inner\"><\/div>\n\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-39755ec elementor-widget elementor-widget-heading\" data-id=\"39755ec\" data-element_type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t<style>\/*! elementor - v3.7.2 - 21-08-2022 *\/\n.elementor-heading-title{padding:0;margin:0;line-height:1}.elementor-widget-heading .elementor-heading-title[class*=elementor-size-]>a{color:inherit;font-size:inherit;line-height:inherit}.elementor-widget-heading .elementor-heading-title.elementor-size-small{font-size:15px}.elementor-widget-heading .elementor-heading-title.elementor-size-medium{font-size:19px}.elementor-widget-heading .elementor-heading-title.elementor-size-large{font-size:29px}.elementor-widget-heading .elementor-heading-title.elementor-size-xl{font-size:39px}.elementor-widget-heading .elementor-heading-title.elementor-size-xxl{font-size:59px}<\/style><h2 class=\"elementor-heading-title elementor-size-default\">Conference Program<\/h2>\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<section class=\"elementor-section elementor-inner-section elementor-element elementor-element-3a1d71b elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"3a1d71b\" data-element_type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-inner-column elementor-element elementor-element-c80f367\" data-id=\"c80f367\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t\t\t<div class=\"elementor-element elementor-element-17e0594 elementor-align-center elementor-widget elementor-widget-button\" data-id=\"17e0594\" data-element_type=\"widget\" data-widget_type=\"button.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<div class=\"elementor-button-wrapper\">\n\t\t\t<a href=\"https:\/\/www.eventbrite.com\/e\/recomb-2022-tickets-264776472557\" target=\"_blank\" class=\"elementor-button-link elementor-button elementor-size-lg\" role=\"button\">\n\t\t\t\t\t\t<span class=\"elementor-button-content-wrapper\">\n\t\t\t\t\t\t\t<span class=\"elementor-button-icon elementor-align-icon-left\">\n\t\t\t\t<i aria-hidden=\"true\" class=\"far fa-calendar-alt\"><\/i>\t\t\t<\/span>\n\t\t\t\t\t\t<span class=\"elementor-button-text\">Register Now<\/span>\n\t\t<\/span>\n\t\t\t\t\t<\/a>\n\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-inner-column elementor-element elementor-element-3099438\" data-id=\"3099438\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t\t\t<div class=\"elementor-element elementor-element-aa4ae67 elementor-widget elementor-widget-text-editor\" data-id=\"aa4ae67\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t<style>\/*! elementor - v3.7.2 - 21-08-2022 *\/\n.elementor-widget-text-editor.elementor-drop-cap-view-stacked .elementor-drop-cap{background-color:#818a91;color:#fff}.elementor-widget-text-editor.elementor-drop-cap-view-framed .elementor-drop-cap{color:#818a91;border:3px solid;background-color:transparent}.elementor-widget-text-editor:not(.elementor-drop-cap-view-default) .elementor-drop-cap{margin-top:8px}.elementor-widget-text-editor:not(.elementor-drop-cap-view-default) .elementor-drop-cap-letter{width:1em;height:1em}.elementor-widget-text-editor .elementor-drop-cap{float:left;text-align:center;line-height:1;font-size:50px}.elementor-widget-text-editor .elementor-drop-cap-letter{display:inline-block}<\/style>\t\t\t\t<p><strong>All times <span style=\"text-decoration: underline;\">US Pacific Time (PDT)<\/span>;<br>&nbsp; [PT] for proceedings talk, [HT] for highlights talk; <br>[PT] takes 20 minutes, [HT] takes 15 minutes<br><\/strong><a href=\"https:\/\/link.springer.com\/book\/10.1007\/978-3-031-04749-7\" target=\"_blank\"><b><u>Link to online proceedings<\/u><\/b><\/a><strong><br><\/strong><\/p>\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<div class=\"elementor-element elementor-element-771dfe1 elementor-widget elementor-widget-spacer\" data-id=\"771dfe1\" data-element_type=\"widget\" data-widget_type=\"spacer.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<div class=\"elementor-spacer\">\n\t\t\t<div class=\"elementor-spacer-inner\"><\/div>\n\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-d74077d elementor-tabs-alignment-center elementor-hidden-mobile elementor-tabs-view-horizontal elementor-widget elementor-widget-tabs\" data-id=\"d74077d\" data-element_type=\"widget\" data-widget_type=\"tabs.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t<style>\/*! elementor - v3.7.2 - 21-08-2022 *\/\n.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tabs-wrapper{width:25%;-ms-flex-negative:0;flex-shrink:0}.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tab-desktop-title.elementor-active{border-right-style:none}.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tab-desktop-title.elementor-active:after,.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tab-desktop-title.elementor-active:before{height:999em;width:0;right:0;border-right-style:solid}.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tab-desktop-title.elementor-active:before{top:0;-webkit-transform:translateY(-100%);-ms-transform:translateY(-100%);transform:translateY(-100%)}.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tab-desktop-title.elementor-active:after{top:100%}.elementor-widget-tabs.elementor-tabs-view-horizontal .elementor-tab-desktop-title{display:table-cell}.elementor-widget-tabs.elementor-tabs-view-horizontal .elementor-tab-desktop-title.elementor-active{border-bottom-style:none}.elementor-widget-tabs.elementor-tabs-view-horizontal .elementor-tab-desktop-title.elementor-active:after,.elementor-widget-tabs.elementor-tabs-view-horizontal .elementor-tab-desktop-title.elementor-active:before{bottom:0;height:0;width:999em;border-bottom-style:solid}.elementor-widget-tabs.elementor-tabs-view-horizontal .elementor-tab-desktop-title.elementor-active:before{right:100%}.elementor-widget-tabs.elementor-tabs-view-horizontal .elementor-tab-desktop-title.elementor-active:after{left:100%}.elementor-widget-tabs .elementor-tab-content,.elementor-widget-tabs .elementor-tab-title,.elementor-widget-tabs .elementor-tab-title:after,.elementor-widget-tabs .elementor-tab-title:before,.elementor-widget-tabs .elementor-tabs-content-wrapper{border:1px #d4d4d4}.elementor-widget-tabs .elementor-tabs{text-align:left}.elementor-widget-tabs .elementor-tabs-wrapper{overflow:hidden}.elementor-widget-tabs .elementor-tab-title{cursor:pointer;outline:var(--focus-outline,none)}.elementor-widget-tabs .elementor-tab-desktop-title{position:relative;padding:20px 25px;font-weight:700;line-height:1;border:solid transparent}.elementor-widget-tabs .elementor-tab-desktop-title.elementor-active{border-color:#d4d4d4}.elementor-widget-tabs .elementor-tab-desktop-title.elementor-active:after,.elementor-widget-tabs .elementor-tab-desktop-title.elementor-active:before{display:block;content:\"\";position:absolute}.elementor-widget-tabs .elementor-tab-desktop-title:focus-visible{border:1px solid #000}.elementor-widget-tabs .elementor-tab-mobile-title{padding:10px;cursor:pointer}.elementor-widget-tabs .elementor-tab-content{padding:20px;display:none}@media (max-width:767px){.elementor-tabs .elementor-tab-content,.elementor-tabs .elementor-tab-title{border-style:solid solid none}.elementor-tabs .elementor-tabs-wrapper{display:none}.elementor-tabs .elementor-tabs-content-wrapper{border-bottom-style:solid}.elementor-tabs .elementor-tab-content{padding:10px}}@media (min-width:768px){.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tabs{display:-webkit-box;display:-ms-flexbox;display:flex}.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tabs-wrapper{-webkit-box-orient:vertical;-webkit-box-direction:normal;-ms-flex-direction:column;flex-direction:column}.elementor-widget-tabs.elementor-tabs-view-vertical .elementor-tabs-content-wrapper{-webkit-box-flex:1;-ms-flex-positive:1;flex-grow:1;border-style:solid solid solid none}.elementor-widget-tabs.elementor-tabs-view-horizontal .elementor-tab-content{border-style:none solid solid}.elementor-widget-tabs.elementor-tabs-alignment-center .elementor-tabs-wrapper,.elementor-widget-tabs.elementor-tabs-alignment-end .elementor-tabs-wrapper,.elementor-widget-tabs.elementor-tabs-alignment-stretch .elementor-tabs-wrapper{display:-webkit-box;display:-ms-flexbox;display:flex}.elementor-widget-tabs.elementor-tabs-alignment-center .elementor-tabs-wrapper{-webkit-box-pack:center;-ms-flex-pack:center;justify-content:center}.elementor-widget-tabs.elementor-tabs-alignment-end .elementor-tabs-wrapper{-webkit-box-pack:end;-ms-flex-pack:end;justify-content:flex-end}.elementor-widget-tabs.elementor-tabs-alignment-stretch.elementor-tabs-view-horizontal .elementor-tab-title{width:100%}.elementor-widget-tabs.elementor-tabs-alignment-stretch.elementor-tabs-view-vertical .elementor-tab-title{height:100%}.elementor-tabs .elementor-tab-mobile-title{display:none}}<\/style>\t\t<div class=\"elementor-tabs\">\n\t\t\t<div class=\"elementor-tabs-wrapper\" role=\"tablist\" >\n\t\t\t\t\t\t\t\t\t<div id=\"elementor-tab-title-2251\" class=\"elementor-tab-title elementor-tab-desktop-title\" aria-selected=\"true\" data-tab=\"1\" role=\"tab\" tabindex=\"0\" aria-controls=\"elementor-tab-content-2251\" aria-expanded=\"false\">Sunday May 22, 2022<\/div>\n\t\t\t\t\t\t\t\t\t<div id=\"elementor-tab-title-2252\" class=\"elementor-tab-title elementor-tab-desktop-title\" aria-selected=\"false\" data-tab=\"2\" role=\"tab\" tabindex=\"-1\" aria-controls=\"elementor-tab-content-2252\" aria-expanded=\"false\">Monday May 23, 2022<\/div>\n\t\t\t\t\t\t\t\t\t<div id=\"elementor-tab-title-2253\" class=\"elementor-tab-title elementor-tab-desktop-title\" aria-selected=\"false\" data-tab=\"3\" role=\"tab\" tabindex=\"-1\" aria-controls=\"elementor-tab-content-2253\" aria-expanded=\"false\">Tuesday May 24, 2022<\/div>\n\t\t\t\t\t\t\t\t\t<div id=\"elementor-tab-title-2254\" class=\"elementor-tab-title elementor-tab-desktop-title\" aria-selected=\"false\" data-tab=\"4\" role=\"tab\" tabindex=\"-1\" aria-controls=\"elementor-tab-content-2254\" aria-expanded=\"false\">Wednesday May 25, 2022<\/div>\n\t\t\t\t\t\t\t<\/div>\n\t\t\t<div class=\"elementor-tabs-content-wrapper\" role=\"tablist\" aria-orientation=\"vertical\">\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-tab-title elementor-tab-mobile-title\" aria-selected=\"true\" data-tab=\"1\" role=\"tab\" tabindex=\"0\" aria-controls=\"elementor-tab-content-2251\" aria-expanded=\"false\">Sunday May 22, 2022<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2251\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"1\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2251\" tabindex=\"0\" hidden=\"false\"><p>8:00 &#8211; 8:15 <strong>Welcome Remarks<\/strong><\/p><p>8:15 &#8211; 9:15 <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><a href=\"http:\/\/renlab.sdsc.edu\/renlab_website\/\"><em><span style=\"text-decoration: underline;\"><span style=\"color: #0000ff; text-decoration: underline;\">Bing Ren<\/span><\/span><\/em><\/a>, Single-cell analysis of epigenome in health and disease<\/p><p>9:15 &#8211; 10:15 <strong>Talks (Single-cell Multiomics)<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><b>Session chair:<\/b> Jingyi Jessica Li<\/span><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em><u>Pinar Demetci<\/u>, Rebecca Santorella, Bjorn Sandstede and Ritambhara Singh<\/em>, Unsupervised integration of single-cell multi-omics datasets with disparities in cell-type representation<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Ran Zhang<\/u>, Laetitia Meng-Papaxanthos, Jean-Philippe Vert and William Noble<\/em>, Semi-supervised single-cell cross-modality translation using Polarbear<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Chen Li<\/u>, Maria Virgilio, Kathleen Collins and Joshua Welch,<\/em> Single-cell multi-omic velocity infers dynamic and decoupled gene regulation<\/span><\/p><p>10:15 &#8211; 10:25 <strong>Coffee Break<\/strong><\/p><p>10:25 &#8211; 11:20 <strong>Talks (3D Omics)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Fengzhu Sun<\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Ruochi Zhang<\/u>, Tianming Zhou and Jian Ma<\/em>, Ultrafast and Interpretable Single-cell 3D Genome Analysis with Fast-Higashi<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Yue Qin<\/u>, Edward Huttlin, Casper Winsnes, Maya Gosztyla, Ludivine Wacheul, Marcus Kelly, Steven Blue, Fan Zheng, Michael Chen, Leah Schaffer, Katherine Licon, Anna B\u00e4ckstr\u00f6m, Laura Pontano Vaites, John Lee, Wei Ouyang, Sophie Liu, Tian Zhang, Erica Silva, Jisoo Park, Adriana Pitea, Jason Kreisberg, Steven Gygi, Jianzhu Ma, J. Wade Harper, Gene Yeo, Denis Lafontaine, Emma Lundberg and Trey Ideker<\/em>, A multi-scale map of cell structure fusing protein images and interactions<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Dunming Hua, Ming Gu, Yanyi Du, Li Qi, Xiangjun Du, Zhidong Bai, Xiaopeng Zhu and <u>Dechao Tian<\/u><\/em>, DiffDomain enables identification of structurally reorganized topologically associating domains<\/span><\/p><p>11:20 &#8211; 12:15 <strong>Talks (Statistics)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Leah Schaffer<\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Jacob Schreiber<\/u>, Sean Whalen, William Noble and Katherine Pollard<\/em>, Navigating the pitfalls of applying machine learning in genomics<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Fengzhu Sun<\/u><\/em>, DeepLINK: Deep learning inference using knockoffs with applications to genomics<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Nicasia Beebe-Wang<\/u>, Safiye Celik, Ethan Weinberger, Pascal Sturmfels, Philip L. De Jager, Sara Mostafavi and Su-In Lee<\/em>, Unified AI framework to uncover deep interrelationships between gene expression and Alzheimer\u2019s disease neuropathologies<\/span><\/p><p>12:15 &#8211; 13:30\u00a0<span style=\"color: #0000ff;\"><a style=\"background-color: rgba(255, 255, 255, 0.25); font-size: 1rem; color: #0000ff;\" href=\"\/restaurants#LunchRECOMB2022\" target=\"_blank\" rel=\"noopener\"><b><u>Lunch Break (on your own)<\/u><\/b><\/a><\/span><\/p><p>13:30 &#8211; 14:30 <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/med.stanford.edu\/changlab.html\"><em><span style=\"text-decoration: underline;\"><span style=\"color: #0000ff; text-decoration: underline;\">Howard Chang<\/span><\/span><\/em><\/a>, Personal regulome navigation<\/span><\/p><p>14:30 &#8211; 15:10 <strong>Talks (Cancer I)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Mohammed El-Kebir<\/p><p style=\"padding-left: 40px;\">[PT] <em><u>Xiang Ge Luo<\/u>, Jack Kuipers and Niko Beerenwinkel<\/em>, <span data-sheets-value=\"{\" data-sheets-userformat=\"{\">Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity or co-occurrence from tumor mutation trees<\/span><\/p><p style=\"padding-left: 40px;\">[PT] Jingkang Zhao, <u>Vincentius Martin<\/u> and Raluca Gordan, <span data-sheets-value=\"{\" data-sheets-userformat=\"{\">Transcription Factor-Centric Approach to Identify Non-Recurring Putative Regulatory Drivers in Cancer<\/span><\/p><p>15:10 &#8211; 15:20 <strong>Coffee Break<\/strong><\/p><p>15:20 &#8211; 16:40 <strong>Talks (Metagenomics)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Iman Hajirasouliha<\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Pesho Ivanov<\/u>, Benjamin Bichsel and Martin Vechev<\/em>, Fast and Optimal Sequence-to-Graph Alignment Guided by Seeds<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Quang Minh Hoang<\/u>, Hongyu Zheng and Carl Kingsford<\/em>, DeepMinimizer: A Differentiable Framework for Optimizing Sequence-Specific Minimizer Schemes<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Vijini Mallawaarachchi<\/u> and Yu Lin<\/em>, MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Pengfei Zhang, Zhengyuan Jiang, Yixuan Wang and <u>Yu Li<\/u><\/em>, CLMB: deep contrastive learning for robust metagenomic binning<\/span><\/p><p>16:40 &#8211; 18:40 <strong>Business Meeting<\/strong><\/p><\/div>\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-tab-title elementor-tab-mobile-title\" aria-selected=\"false\" data-tab=\"2\" role=\"tab\" tabindex=\"-1\" aria-controls=\"elementor-tab-content-2252\" aria-expanded=\"false\">Monday May 23, 2022<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2252\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"2\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2252\" tabindex=\"0\" hidden=\"hidden\"><p><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">8:00 &#8211; 8:55 <strong>Talks (Single-cell Transcriptomics I)<\/strong><\/span><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Joshua Welch<\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Dongshunyi Li,<\/u> Jun Ding and Ziv Bar-Joseph<\/em>, Unsupervised cell functional annotation for single-cell RNA-Seq<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Mohammad Lotfollahi<\/em>, Mapping single-cell data to reference atlases by transfer learning<br \/><b>Speaker:<\/b> <u><i>Malte L\u00fccken<\/i><\/u><\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Kun Qian, Shiwei Fu, Li Hongwei and <u>Wei Vivian Li<\/u><\/em>, A novel matrix factorization model for interpreting single-cell gene expression from biologically heterogeneous data<\/span><\/p><p>8:55 &#8211; 9:05 <strong>Coffee Break<\/strong><\/p><p>9:05 &#8211; 10:15 <strong>Talks (Genetics)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Eran Halperin<\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Sai Zhang<\/u>, Johnathan Cooper-Knock, Annika Weimer, Minyi Shi, Tobias Moll, Jack Marshall, Calum Harvey, Helia Ghahremani Nezhad, John Franklin, Cleide dos Santos Souza, Ke Ning, Cheng Wang, Jingjing Li, Allison Dilliott, Sali Farhan, Eran Elhaik, Iris Pasniceanu, Matthew Livesey, Chen Eitan, Eran Hornstein, Kevin Kenna, Jan Veldink, Laura Ferraiuolo, Pamela Shaw and Michael Snyder<\/em>, Genome-wide identification of the genetic basis of amyotrophic lateral sclerosis<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Zachary R. McCaw, Thomas Colthurst, Taedong Yun, Nicholas A. Furlotte, Andrew Carroll, Babak Alipanahi, Cory Y. McLean and <u>Farhad Hormozdiari<\/u><\/em>, DeepNull models non-linear covariate effects to improve phenotypic prediction and association power<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Meihua Dang<\/u>, Anji Liu, Xinzhu Wei, Sriram Sankararaman and Guy Van den Broeck<\/em>, Tractable and expressive generative models of genetic variation data<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Agniva Chowdhury, <u>Aritra Bose<\/u>, Samson Zhou, David P. Woodruff and Petros Drineas<\/em>, A Fast, Provably Accurate Approximation Algorithm for Sparse Principal Component Analysis Reveals Human Genetic Variation Across the World<\/span><\/p><p>10:15 &#8211; 10:25 <strong>Coffee Break<\/strong><\/p><p>10:25 &#8211; 11:00 <strong>Talks (Networks)<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><b>Session chair:<\/b> Ritambhara Singh<\/span><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em><u>Haohan Wang<\/u>, Oscar Lopez, Wei Wu and Eric Xing<\/em>, Gene Set Prioritization Guided by Regulatory Networks with p-values through Kernel Mixed Model<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Xiaojun Ma, Ashwin Somasundaram, Zengbiao Qi, Douglas Hartman, Harinder Singh and <u>Hatice Osmanbeyoglu<\/u><\/em>, SPaRTAN, a computational framework for linking cell-surface receptors to transcriptional regulators<\/span><\/p><p>11:00 &#8211; 12:00 <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"http:\/\/www.cs.tufts.edu\/~cowen\/\"><em><span style=\"text-decoration: underline;\"><span style=\"color: #0000ff; text-decoration: underline;\">Lenore Cowen<\/span><\/span><\/em><\/a>, Pathways for Learning from Structure and Organization of Protein Interaction Networks<\/span><\/p><p>12:00 &#8211; 13:30 <span style=\"color: #0000ff;\"><strong><a style=\"color: #0000ff;\" href=\"\/restaurants#LunchRECOMB2022\"><u>Lunch Break (on your own)<\/u><\/a><\/strong><\/span><\/p><p>13:30 &#8211; 14:30 <strong>Talks (Annotation)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Serghei Mangul<\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Yang Yang<\/u>, Yuchuan Wang, Yang Zhang and Jian Ma<\/em>, CONCERT: Genome-wide prediction of sequence elements that modulate DNA replication timing<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Chuanyi Zhang<\/u>, Palash Sashittal and Mohammed El-Kebir<\/em>, CORSID enables de novo identification of transcription regulatory sequences and genes in coronaviruses<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Joshua Wetzel, Kaiqian Zhang and <u>Mona Singh<\/u><\/em>, Learning probabilistic protein-DNA recognition codes from DNA-binding specificities using structural mappings<\/span><\/p><p>14:30 &#8211; 16:20 <strong>Poster Session I: odd-numbered posters\u00a0<\/strong><span style=\"color: #0000ff;\"><a style=\"background-color: rgba(255, 255, 255, 0.25); font-size: 1rem; color: #0000ff;\" href=\"https:\/\/www.dropbox.com\/s\/n6gz2791wk7n4u0\/RECOMB%202022_submissions_2022-05-01_1651408483.xlsx?dl=0\" target=\"_blank\" rel=\"noopener\"><b><u>(poster list)<\/u><\/b><\/a><\/span><\/p><p>16:20 &#8211; 17:10 <strong>Talks (Covid)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Louxin Zhang<\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Serghei Mangul, <u>Sergey Knyazev<\/u>, Karishma Chhugani, Ram Ayyala, Varuni Sarwal, Harman Singh, Dhrithi Deshpande, Angela Lu, Smruthi Karthikeyan, Alex Zelikovsky, Rob Knight and Keith Crandall<\/em>, Unlocking capacities of genomics for the COVID-19 response and future pandemics<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Seyran Saeedi, Myrna Serrano, Dennis Yang, Paul Brooks, Gregory Buck and <u>Tomasz Arodz<\/u><\/em>, Real-valued Group Testing for Quantitative Molecular Assays<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Juncheng Wu, Anushka Rajesh, Yu-Ning Huang, Karishma Chhugani, Rajesh Acharya, Kerui Peng, Ruth D. Johnson, Andrada Fiscutean, Carla Daniela Robles-Espinoza, Francisco M. De La Vega, Riyue Bao and <u>Serghei Mangul<\/u><\/em>, Virtual meetings promise to eliminate geographical and administrative barriers and increase accessibility, diversity and inclusivity<\/span><\/p><p>17:10 &#8211; 18:10 <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/www.choderalab.org\/\"><em><span style=\"text-decoration: underline;\"><span style=\"color: #0000ff; text-decoration: underline;\">John Chodera<\/span><\/span><\/em><\/a>, The COVID Moonshot: Open science discovery of a novel oral SARS-CoV-2 antiviral<\/span><\/p><\/div>\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-tab-title elementor-tab-mobile-title\" aria-selected=\"false\" data-tab=\"3\" role=\"tab\" tabindex=\"-1\" aria-controls=\"elementor-tab-content-2253\" aria-expanded=\"false\">Tuesday May 24, 2022<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2253\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"3\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2253\" tabindex=\"0\" hidden=\"hidden\"><p>8:00 &#8211; 9:20 <strong>Talks (Phylogenomics)<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><b>Session chair:<\/b> Lingling Jin<\/span><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em><u>Max Hill<\/u>\u00a0and Sebastien Roch<\/em>, On the Effect of Intralocus Recombination on Triplet-Based Species Tree Estimation<\/span><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT]<em> <u>Eleonora Rachtman<\/u>, Shahab Sarmashghi, Vineet Bafna and Siavash Mirarab<\/em>, Uncertainty quantification using subsampling for assembly-free estimates of genomic distance and phylogenetic relationships<\/span><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em>Sazan Mahbub, <u>Shashata Sawmya<\/u>, Arpita Saha, Rezwana Reaz, M. Sohel Rahman and Md Shamsuzzoha Bayzid<\/em>, QT-GILD: Quartet based gene tree imputation using deep learning improves phylogenomic analyses despite missing data<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Pavel Skums<\/u>, Fatemeh Mohebbi, Viachaslau Tsyvina, Pelin Burcak Icer, Sumathi Ramachandran and Yury Khudyakov<\/em>, SOPHIE: viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework<\/span><\/p><p>9:20 &#8211; 9:30 <strong>Coffee Break<\/strong><\/p><p>9:30 &#8211; 10:30 <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/www.ebi.ac.uk\/research-beta\/marioni\/\"><span style=\"text-decoration: underline;\"><em><span style=\"color: #0000ff; text-decoration: underline;\">John Marioni<\/span><\/em><\/span><\/a>, Computational challenges in single-cell genomics<\/span><\/p><p>10:30 &#8211; 11:10 <strong>Talks (Single-cell Transcriptomics II)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Wei Vivian Li<\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Elior Rahmani,<\/u> Michael Jordan and Nir Yosef<\/em>, Identifying systematic variation at the single-cell level by leveraging low-resolution population-level data<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Cong Ma<\/u>, Uthsav Chitra, Shirley Zhang and Benjamin Raphael<\/em>, Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics<\/span><\/p><p>11:10 &#8211; 13:00 <strong>Poster Session II: even-numbered posters\u00a0<\/strong><span style=\"color: #0000ff;\"><a style=\"background-color: rgba(255, 255, 255, 0.25); font-size: 1rem; color: #0000ff;\" href=\"https:\/\/www.dropbox.com\/s\/n6gz2791wk7n4u0\/RECOMB%202022_submissions_2022-05-01_1651408483.xlsx?dl=0\" target=\"_blank\" rel=\"noopener\"><b><u>(poster list)<\/u><\/b><\/a><\/span><\/p><p>13:00 &#8211; 14:30 <span style=\"color: #0000ff;\"><strong><a style=\"color: #0000ff;\" href=\"\/restaurants#LunchRECOMB2022\"><u>Lunch Break (on your own)<\/u><\/a><\/strong><\/span><\/p><p>14:30 &#8211; 15:30 <strong>Talks (Assembly I)<\/strong><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Benjamin Langmead<\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Mikhail Karasikov<\/u>, Harun Mustafa, Gunnar Ratsch and Andre Kahles<\/em>, Lossless Indexing with Counting de Bruijn Graphs<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Shahbaz Khan, Milla Kortelainen, Manuel Ariel C\u00e1ceres Reyes, <u>Lucia Williams<\/u> and Alexandru I. Tomescu<\/em>, Safety and Completeness in Flow Decompositions for RNA Assembly<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Amatur Rahman<\/u> and Paul Medvedev<\/em>, Uncovering hidden assembly artifacts: when unitigs are not safe and bidirected graphs are not helpful<\/span><\/p><p>15:30 &#8211; 15:40 <strong>Coffee Break<\/strong><\/p><p>15:40 &#8211; 16:40 <a href=\"https:\/\/g2lab.org\/recomb22\/\"><span style=\"text-decoration: underline;\"><span style=\"color: #0000ff; text-decoration: underline;\"><strong>Privacy and Security<\/strong>\u00a0<strong>Workshop<\/strong><\/span><\/span><\/a><\/p><p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Gamze G\u00fcrsoy<\/p><p>18:00 &#8211; 21:30 <span style=\"text-decoration: underline; color: #0000ff;\"><a style=\"color: #0000ff;\" href=\"\/restaurants#SpecialeventAquarium\"><strong>Social Event (at the Scripps Aquarium)<\/strong><\/a><\/span><\/p><p style=\"padding-left: 40px;\"><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">18:00\u00a0<\/span><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">&#8211;<\/span><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">\u00a0<\/span><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">19:15\u00a0<\/span>Charter buses pick up at Marriott<\/p><p style=\"padding-left: 40px;\"><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">21:30\u00a0<\/span><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">&#8211;<\/span><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">\u00a0<\/span><span style=\"color: var(--ast-global-color-3); font-size: 1rem;\">21:45\u00a0<\/span>Return buses pick up at Aquarium (with an early return bus 20:30).<\/p><\/div>\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-tab-title elementor-tab-mobile-title\" aria-selected=\"false\" data-tab=\"4\" role=\"tab\" tabindex=\"-1\" aria-controls=\"elementor-tab-content-2254\" aria-expanded=\"false\">Wednesday May 25, 2022<\/div>\n\t\t\t\t\t<div id=\"elementor-tab-content-2254\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"4\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2254\" tabindex=\"0\" hidden=\"hidden\"><p>8:00 &#8211; 9:00 <strong>Keynote Talk<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><a href=\"https:\/\/odin.mdacc.tmc.edu\/~wwang7\/index.html\"><em><span style=\"text-decoration: underline;\"><span style=\"color: #0000ff; text-decoration: underline;\">Wenyi Wang<\/span><\/span><\/em><\/a>, <span data-sheets-value=\"{\" data-sheets-userformat=\"{\">Deciphering cancer cell evolution and ecology<\/span><\/p>\n<p>9:00 &#8211; 9:40 <strong>Talks (Cancer II)<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Salem Malikic<\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Uthsav Chitra<\/u>, Tae Yoon Park and Ben Raphael<\/em>, NetMix2: Unifying network propagation and altered subnetworks<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Pedro F. Ferreira<\/u>, Jack Kuipers and Niko Beerenwinkel<\/em>, Mapping single-cell transcriptomes to copy number evolutionary trees<\/span><\/p>\n<p>9:40 &#8211; 9:50 <strong>Coffee Break<\/strong><\/p>\n<p>9:50 &#8211; 10:50 <strong>Talks<\/strong> <strong>(Genotype Phenotype)<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><b>Session chair:<\/b> Yun William Yu<\/span><\/p>\n<p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em><u>Alireza Ganjdanesh<\/u>, Jipeng Zhang, Wei Chen and Heng Huang<\/em>, Multi-Modal Genotype and Phenotype Mutual Learning to Enhance Single-Modal Input Based Longitudinal Outcome Prediction<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Michael Ford<\/u>, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz, Yu Zhang, Sarah Weber, Mary Magliocco, Jason Barnett, Sandhya Xirasagar, Smilee Samuel, Luisa Imberti, Paolo Bonfanti, Andrea Biondi, Clifton Dalgard, Stephen Chanock, Lindsey Rosen, Steven Holland, Helen Su, Luigi Notarangelo, Uzi Vishkin, Corey Watson and S. Cenk Sahinalp<\/em>, ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Ulzee An<\/u>, Na Cai, Andy Dahl and Sriram Sankararaman<\/em>, AutoComplete: Deep Learning-based Phenotype Imputation for Large-scale Biomedical Data<\/span><\/p>\n<p>10:50 &#8211; 11:00 <strong>Coffee Break<\/strong><\/p>\n<p>11:00 &#8211; 12:00 <strong>Talks (Assembly II)<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Faraz Hach<\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Fernando Hugo Cunha Dias, <u>Lucia Williams<\/u>, Brendan Mumey and Alexandru I. Tomescu<\/em>, Fast, Flexible, and Exact Minimum Flow Decompositions via ILP<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Chirag Jain, <u>Daniel Gibney<\/u> and Sharma V. Thankachan<\/em>, Co-linear Chaining with Overlaps and Gap Costs<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Daniel Gibney<\/u>, Sharma V. Thankachan and Srinivas Aluru<\/em>, The Complexity of Approximate Pattern Matching on De Bruijn Graphs<\/span><\/p>\n<p>12:00 &#8211; 13:30 <span style=\"color: #0000ff;\"><strong><a style=\"color: #0000ff;\" href=\"\/restaurants#LunchRECOMB2022\"><u>Lunch Break (on your own)<\/u><\/a><\/strong><\/span><\/p>\n<p>13:30 &#8211; 14:30 <strong>Talks (Molecular structure)<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><b>Session chair:<\/b> Helena Gomes Dos Santos<\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Nathan Guerin<\/u>, Teresa Kaserer and Bruce Donald<\/em>, Resistor: an Algorithm for Predicting Resistance Mutations using Pareto Optimization over Multistate Protein Design and Mutational Signatures<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Zheng Dai<\/u>, Sachit Saksena, Geraldine Horny, Christine Banholzer, Stefan Ewert and David Gifford<\/em>, Ultra high diversity factorizable libraries for efficient therapeutic discovery<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em><u>Hanwen Xu<\/u> and Sheng Wang<\/em>, ProTranslator: zero-shot protein function prediction using textual description<\/span><\/p>\n<p>14:30 &#8211; 15:30 <strong>Keynote Talk<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/www.regina.csail.mit.edu\/\"><span style=\"text-decoration: underline;\"><em><span style=\"color: #0000ff; text-decoration: underline;\">Regina Barzilay<\/span><\/em><\/span><\/a>, Infusing Biology into Molecular Models for Drug Discovery<\/span><\/p>\n<p>15:30pm &#8211; 15:50pm <b>Awards Ceremony &amp; Closing Remarks<\/b><\/p><\/div>\n\t\t\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-ca21a74 elementor-hidden-desktop elementor-hidden-tablet elementor-widget elementor-widget-toggle\" data-id=\"ca21a74\" data-element_type=\"widget\" data-widget_type=\"toggle.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t<style>\/*! elementor - v3.7.2 - 21-08-2022 *\/\n.elementor-toggle{text-align:left}.elementor-toggle .elementor-tab-title{font-weight:700;line-height:1;margin:0;padding:15px;border-bottom:1px solid #d4d4d4;cursor:pointer;outline:none}.elementor-toggle .elementor-tab-title .elementor-toggle-icon{display:inline-block;width:1em}.elementor-toggle .elementor-tab-title .elementor-toggle-icon svg{-webkit-margin-start:-5px;margin-inline-start:-5px;width:1em;height:1em}.elementor-toggle .elementor-tab-title .elementor-toggle-icon.elementor-toggle-icon-right{float:right;text-align:right}.elementor-toggle .elementor-tab-title .elementor-toggle-icon.elementor-toggle-icon-left{float:left;text-align:left}.elementor-toggle .elementor-tab-title .elementor-toggle-icon .elementor-toggle-icon-closed{display:block}.elementor-toggle .elementor-tab-title .elementor-toggle-icon .elementor-toggle-icon-opened{display:none}.elementor-toggle .elementor-tab-title.elementor-active{border-bottom:none}.elementor-toggle .elementor-tab-title.elementor-active .elementor-toggle-icon-closed{display:none}.elementor-toggle .elementor-tab-title.elementor-active .elementor-toggle-icon-opened{display:block}.elementor-toggle .elementor-tab-content{padding:15px;border-bottom:1px solid #d4d4d4;display:none}@media (max-width:767px){.elementor-toggle .elementor-tab-title{padding:12px}.elementor-toggle .elementor-tab-content{padding:12px 10px}}.e-container>.elementor-widget-toggle{width:var(--container-widget-width,100%)}<\/style>\t\t<div class=\"elementor-toggle\" role=\"tablist\">\n\t\t\t\t\t\t\t<div class=\"elementor-toggle-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2111\" class=\"elementor-tab-title\" data-tab=\"1\" role=\"tab\" aria-controls=\"elementor-tab-content-2111\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon elementor-toggle-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-closed\"><i class=\"fas fa-caret-right\"><\/i><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-opened\"><i class=\"elementor-toggle-icon-opened fas fa-caret-up\"><\/i><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a href=\"\" class=\"elementor-toggle-title\">Sunday May 22, 2022<\/a>\n\t\t\t\t\t<\/div>\n\n\t\t\t\t\t<div id=\"elementor-tab-content-2111\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"1\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2111\"><p>8:00am &#8211; 8:15am <strong>Welcome Remarks<\/strong><\/p><p>8:15am &#8211; 9:15am <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><a href=\"http:\/\/renlab.sdsc.edu\/renlab_website\/\"><em><span style=\"text-decoration: underline;\">Bing Ren<\/span><\/em><\/a>, Single-cell analysis of epigenome in health and disease<\/p><p>9:15am &#8211; 10:15am <strong>Talks (Single-cell Multiomics)<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em>Pinar Demetci, Rebecca Santorella, Bjorn Sandstede and Ritambhara Singh<\/em>, Unsupervised integration of single-cell multi-omics datasets with disparities in cell-type representation<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Ran Zhang, Laetitia Meng-Papaxanthos, Jean-Philippe Vert and William Noble<\/em>, Semi-supervised single-cell cross-modality translation using Polarbear<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Chen Li, Maria Virgilio, Kathleen Collins and Joshua Welch,<\/em> Single-cell multi-omic velocity infers dynamic and decoupled gene regulation<\/span><\/p><p>10:15am &#8211; 10:25am <strong>Coffee Break<\/strong><\/p><p>10:25am &#8211; 11:20am <strong>Talks (3D Omics)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Ruochi Zhang, Tianming Zhou and Jian Ma<\/em>, Ultrafast and Interpretable Single-cell 3D Genome Analysis with Fast-Higashi<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Yue Qin, Edward Huttlin, Casper Winsnes, Maya Gosztyla, Ludivine Wacheul, Marcus Kelly, Steven Blue, Fan Zheng, Michael Chen, Leah Schaffer, Katherine Licon, Anna B\u00e4ckstr\u00f6m, Laura Pontano Vaites, John Lee, Wei Ouyang, Sophie Liu, Tian Zhang, Erica Silva, Jisoo Park, Adriana Pitea, Jason Kreisberg, Steven Gygi, Jianzhu Ma, J. Wade Harper, Gene Yeo, Denis Lafontaine, Emma Lundberg and Trey Ideker<\/em>, A multi-scale map of cell structure fusing protein images and interactions<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Dunming Hua, Ming Gu, Yanyi Du, Li Qi, Xiangjun Du, Zhidong Bai, Xiaopeng Zhu and Dechao Tian<\/em>, DiffDomain enables identification of structurally reorganized topologically associating domains<\/span><\/p><p>11:20am &#8211; 12:15pm <strong>Talks (Statistics)<\/strong><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Jacob Schreiber, Sean Whalen, William Noble and Katherine Pollard<\/em>, Navigating the pitfalls of applying machine learning in genomics<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Fengzhu Sun<\/em>, DeepLINK: Deep learning inference using knockoffs with applications to genomics<\/span><\/p><p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Nicasia Beebe-Wang, Safiye Celik, Ethan Weinberger, Pascal Sturmfels, Philip L. De Jager, Sara Mostafavi and Su-In Lee<\/em>, Unified AI framework to uncover deep interrelationships between gene expression and Alzheimer\u2019s disease neuropathologies<\/span><\/p><p>12:15pm &#8211; 13:30pm <strong>Lunch Break<\/strong><\/p><p>13:30pm &#8211; 14:30pm <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/med.stanford.edu\/changlab.html\"><em><span style=\"text-decoration: underline;\">Howard Chang<\/span><\/em><\/a>, Personal regulome navigation<\/span><\/p><p>14:30pm &#8211; 15:10pm <strong>Talks (Cancer I)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <em>Xiang Ge Luo, Jack Kuipers and Niko Beerenwinkel<\/em>, <span data-sheets-value=\"{\" data-sheets-userformat=\"{\">Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity or co-occurrence from tumor mutation trees<\/span><\/p><p style=\"padding-left: 40px;\">[PT] Jingkang Zhao, Vincentius Martin and Raluca Gordan, <span data-sheets-value=\"{\" data-sheets-userformat=\"{\">Transcription Factor-Centric Approach to Identify Non-Recurring Putative Regulatory Drivers in Cancer<\/span><\/p><p>15:10pm &#8211; 15:20pm <strong>Coffee Break<\/strong><\/p><p>15:20pm &#8211; 16:40pm <strong>Talks (Metagenomics)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Pesho Ivanov, Benjamin Bichsel and Martin Vechev<\/em>, Fast and Optimal Sequence-to-Graph Alignment Guided by Seeds<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Quang Minh Hoang, Hongyu Zheng and Carl Kingsford<\/em>, DeepMinimizer: A Differentiable Framework for Optimizing Sequence-Specific Minimizer Schemes<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Vijini Mallawaarachchi and Yu Lin<\/em>, MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Pengfei Zhang, Zhengyuan Jiang, Yixuan Wang and Yu Li<\/em>, CLMB: deep contrastive learning for robust metagenomic binning<\/span><\/p><p>16:40pm &#8211; 18:40pm <strong>Business Meeting<\/strong><\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-toggle-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2112\" class=\"elementor-tab-title\" data-tab=\"2\" role=\"tab\" aria-controls=\"elementor-tab-content-2112\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon elementor-toggle-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-closed\"><i class=\"fas fa-caret-right\"><\/i><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-opened\"><i class=\"elementor-toggle-icon-opened fas fa-caret-up\"><\/i><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a href=\"\" class=\"elementor-toggle-title\">Monday May 23, 2022<\/a>\n\t\t\t\t\t<\/div>\n\n\t\t\t\t\t<div id=\"elementor-tab-content-2112\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"2\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2112\"><p><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">8:00am &#8211; 8:55am <strong>Talks (Single-cell Transcriptomics I)<\/strong><\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Dongshunyi Li, Jun Ding and Ziv Bar-Joseph<\/em>, Unsupervised cell functional annotation for single-cell RNA-Seq<\/span><\/p>\n<p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Mohammad Lotfollahi<\/em>, Mapping single-cell data to reference atlases by transfer learning<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Kun Qian, Shiwei Fu, Li Hongwei and Wei Vivian Li<\/em>, A novel matrix factorization model for interpreting single-cell gene expression from biologically heterogeneous data<\/span><\/p>\n<p>8:55am &#8211; 9:05am <strong>Coffee Break<\/strong><\/p>\n<p>9:05am &#8211; 10:15am <strong>Talks (Genetics)<\/strong><\/p>\n<p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Sai Zhang, Johnathan Cooper-Knock, Annika Weimer, Minyi Shi, Tobias Moll, Jack Marshall, Calum Harvey, Helia Ghahremani Nezhad, John Franklin, Cleide dos Santos Souza, Ke Ning, Cheng Wang, Jingjing Li, Allison Dilliott, Sali Farhan, Eran Elhaik, Iris Pasniceanu, Matthew Livesey, Chen Eitan, Eran Hornstein, Kevin Kenna, Jan Veldink, Laura Ferraiuolo, Pamela Shaw and Michael Snyder<\/em>, Genome-wide identification of the genetic basis of amyotrophic lateral sclerosis<\/span><\/p>\n<p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Zachary R. McCaw, Thomas Colthurst, Taedong Yun, Nicholas A. Furlotte, Andrew Carroll, Babak Alipanahi, Cory Y. McLean and Farhad Hormozdiari<\/em>, DeepNull models non-linear covariate effects to improve phenotypic prediction and association power<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Meihua Dang, Anji Liu, Xinzhu Wei, Sriram Sankararaman and Guy Van den Broeck<\/em>, Tractable and expressive generative models of genetic variation data<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Agniva Chowdhury, Aritra Bose, Samson Zhou, David P. Woodruff and Petros Drineas<\/em>, A Fast, Provably Accurate Approximation Algorithm for Sparse Principal Component Analysis Reveals Human Genetic Variation Across the World<\/span><\/p>\n<p>10:15am &#8211; 10:25am <strong>Coffee Break<\/strong><\/p>\n<p>10:25am &#8211; 11:00am <strong>Talks (Networks)<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em>Haohan Wang, Oscar Lopez, Wei Wu and Eric Xing<\/em>, Gene Set Prioritization Guided by Regulatory Networks with p-values through Kernel Mixed Model<\/span><\/p>\n<p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Xiaojun Ma, Ashwin Somasundaram, Zengbiao Qi, Douglas Hartman, Harinder Singh and Hatice Osmanbeyoglu<\/em>, SPaRTAN, a computational framework for linking cell-surface receptors to transcriptional regulators<\/span><\/p>\n<p>11:00am &#8211; 12:00pm <strong>Keynote Talk<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"http:\/\/www.cs.tufts.edu\/~cowen\/\"><em><span style=\"text-decoration: underline;\">Lenore Cowen<\/span><\/em><\/a>, Pathways for Learning from Structure and Organization of Protein Interaction Networks<\/span><\/p>\n<p>12:00pm &#8211; 1:30pm <strong>Lunch Break<\/strong><\/p>\n<p>13:30pm &#8211; 14:30pm <strong>Talks (Annotation)<\/strong><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Yang Yang, Yuchuan Wang, Yang Zhang and Jian Ma<\/em>, CONCERT: Genome-wide prediction of sequence elements that modulate DNA replication timing<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Chuanyi Zhang, Palash Sashittal and Mohammed El-Kebir<\/em>, CORSID enables de novo identification of transcription regulatory sequences and genes in coronaviruses<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Joshua Wetzel, Kaiqian Zhang and Mona Singh<\/em>, Learning probabilistic protein-DNA recognition codes from DNA-binding specificities using structural mappings<\/span><\/p>\n<p>14:30pm &#8211; 16:20pm <strong>Poster Session I: odd-numbered posters<\/strong><\/p>\n<p>16:20pm &#8211; 17:10pm <strong>Talks (Covid)<\/strong><\/p>\n<p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Serghei Mangul, Sergey Knyazev, Karishma Chhugani, Ram Ayyala, Varuni Sarwal, Harman Singh, Dhrithi Deshpande, Angela Lu, Smruthi Karthikeyan, Alex Zelikovsky, Rob Knight and Keith Crandall<\/em>, Unlocking capacities of genomics for the COVID-19 response and future pandemics<\/span><\/p>\n<p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Seyran Saeedi, Myrna Serrano, Dennis Yang, Paul Brooks, Gregory Buck and Tomasz Arodz<\/em>, Real-valued Group Testing for Quantitative Molecular Assays<\/span><\/p>\n<p style=\"padding-left: 40px;\">[HT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Juncheng Wu, Anushka Rajesh, Yu-Ning Huang, Karishma Chhugani, Rajesh Acharya, Kerui Peng, Ruth D. Johnson, Andrada Fiscutean, Carla Daniela Robles-Espinoza, Francisco M. De La Vega, Riyue Bao and Serghei Mangul<\/em>, Virtual meetings promise to eliminate geographical and administrative barriers and increase accessibility, diversity and inclusivity<\/span><\/p>\n<p>17:10pm &#8211; 18:10pm <strong>Keynote Talk<\/strong><\/p>\n<p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/www.choderalab.org\/\"><em><span style=\"text-decoration: underline;\">John Chodera<\/span><\/em><\/a>, The COVID Moonshot: Open science discovery of a novel SARS-CoV-2 antiviral<\/span><\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-toggle-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2113\" class=\"elementor-tab-title\" data-tab=\"3\" role=\"tab\" aria-controls=\"elementor-tab-content-2113\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon elementor-toggle-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-closed\"><i class=\"fas fa-caret-right\"><\/i><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-opened\"><i class=\"elementor-toggle-icon-opened fas fa-caret-up\"><\/i><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a href=\"\" class=\"elementor-toggle-title\">Tuesday May 24, 2022<\/a>\n\t\t\t\t\t<\/div>\n\n\t\t\t\t\t<div id=\"elementor-tab-content-2113\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"3\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2113\"><p>8:00am &#8211; 9:20am <strong>Talks (Phylogenomics)<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em>Max Hill and Sebastien Roch<\/em>, On the Effect of Intralocus Recombination on Triplet-Based Species Tree Estimation<\/span><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT]<em> Eleonora Rachtman, Shahab Sarmashghi, Vineet Bafna and Siavash Mirarab<\/em>, Uncertainty quantification using subsampling for assembly-free estimates of genomic distance and phylogenetic relationships<\/span><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em>Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman and Md Shamsuzzoha Bayzid<\/em>, QT-GILD: Quartet based gene tree imputation using deep learning improves phylogenomic analyses despite missing data<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Pavel Skums, Fatemeh Mohebbi, Viachaslau Tsyvina, Pelin Burcak Icer, Sumathi Ramachandran and Yury Khudyakov<\/em>, SOPHIE: viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework<\/span><\/p><p>9:20am &#8211; 9:30am <strong>Coffee Break<\/strong><\/p><p>9:30am &#8211; 10:30am <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/www.ebi.ac.uk\/research-beta\/marioni\/\"><span style=\"text-decoration: underline;\"><em>John Marioni<\/em><\/span><\/a>, Computational challenges in single-cell genomics<\/span><\/p><p>10:30am &#8211; 11:10am <strong>Talks (Single-cell Transcriptomics II)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Elior Rahmani, Michael Jordan and Nir Yosef<\/em>, Identifying systematic variation at the single-cell level by leveraging low-resolution population-level data<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Cong Ma, Uthsav Chitra, Shirley Zhang and Benjamin Raphael<\/em>, Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics<\/span><\/p><p>11:10am &#8211; 13:00pm <strong>Poster Session II: even-numbered posters<\/strong><\/p><p>13:00pm &#8211; 14:30pm <strong>Lunch Break<\/strong><\/p><p>14:30pm &#8211; 15:30pm <strong>Talks (Assembly I)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Mikhail Karasikov, Harun Mustafa, Gunnar Ratsch and Andre Kahles<\/em>, Lossless Indexing with Counting de Bruijn Graphs<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Shahbaz Khan, Milla Kortelainen, Manuel Ariel C\u00e1ceres Reyes, Lucia Williams and Alexandru I. Tomescu<\/em>, Safety and Completeness in Flow Decompositions for RNA Assembly<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Amatur Rahman and Paul Medvedev<\/em>, Uncovering hidden assembly artifacts: when unitigs are not safe and bidirected graphs are not helpful<\/span><\/p><p>15:30pm &#8211; 15:40pm <strong>Coffee Break<\/strong><\/p><p>15:40pm &#8211; 16:40pm <a href=\"https:\/\/g2lab.org\/recomb22\/\"><span style=\"text-decoration: underline;\"><span style=\"color: #0000ff; text-decoration: underline;\"><strong>Privacy and Security<\/strong>\u00a0<strong>Workshop<\/strong><\/span><\/span><\/a><\/p><p>18:00pm &#8211; 22:00pm <strong>Social Event (at the Scripps Aquarium)<\/strong><\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-toggle-item\">\n\t\t\t\t\t<div id=\"elementor-tab-title-2114\" class=\"elementor-tab-title\" data-tab=\"4\" role=\"tab\" aria-controls=\"elementor-tab-content-2114\" aria-expanded=\"false\">\n\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon elementor-toggle-icon-left\" aria-hidden=\"true\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-closed\"><i class=\"fas fa-caret-right\"><\/i><\/span>\n\t\t\t\t\t\t\t\t<span class=\"elementor-toggle-icon-opened\"><i class=\"elementor-toggle-icon-opened fas fa-caret-up\"><\/i><\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t\t<\/span>\n\t\t\t\t\t\t\t\t\t\t\t\t<a href=\"\" class=\"elementor-toggle-title\">Wednesday May 25, 2022<\/a>\n\t\t\t\t\t<\/div>\n\n\t\t\t\t\t<div id=\"elementor-tab-content-2114\" class=\"elementor-tab-content elementor-clearfix\" data-tab=\"4\" role=\"tabpanel\" aria-labelledby=\"elementor-tab-title-2114\"><p>8:00am &#8211; 9:00am <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><a href=\"https:\/\/odin.mdacc.tmc.edu\/~wwang7\/index.html\"><em><span style=\"text-decoration: underline;\">Wenyi Wang<\/span><\/em><\/a>, <span data-sheets-value=\"{\" data-sheets-userformat=\"{\">Deciphering cancer cell evolution and ecology<\/span><\/p><p>9:00am &#8211; 9:40am <strong>Talks (Cancer II)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Uthsav Chitra, Tae Yoon Park and Ben Raphael<\/em>, NetMix2: Unifying network propagation and altered subnetworks<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Pedro F. Ferreira, Jack Kuipers and Niko Beerenwinkel<\/em>, Mapping single-cell transcriptomes to copy number evolutionary trees<\/span><\/p><p>9:40am &#8211; 9:50am <strong>Coffee Break<\/strong><\/p><p>9:50am &#8211; 10:50am <strong>Talks<\/strong> <strong>(Genotype Phenotype)<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\">[PT] <em>Alireza Ganjdanesh, Jipeng Zhang, Wei Chen and Heng Huang<\/em>, Multi-Modal Genotype and Phenotype Mutual Learning to Enhance Single-Modal Input Based Longitudinal Outcome Prediction<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Michael Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz, Yu Zhang, Sarah Weber, Mary Magliocco, Jason Barnett, Sandhya Xirasagar, Smilee Samuel, Luisa Imberti, Paolo Bonfanti, Andrea Biondi, Clifton Dalgard, Stephen Chanock, Lindsey Rosen, Steven Holland, Helen Su, Luigi Notarangelo, Uzi Vishkin, Corey Watson and S. Cenk Sahinalp<\/em>, ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Ulzee An, Na Cai, Andy Dahl and Sriram Sankararaman<\/em>, AutoComplete: Deep Learning-based Phenotype Imputation for Large-scale Biomedical Data<\/span><\/p><p>10:50am &#8211; 11:00am <strong>Coffee Break<\/strong><\/p><p>11:00am &#8211; 12:00pm <strong>Talks (Assembly II)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Fernando Hugo Cunha Dias, Lucia Williams, Brendan Mumey and Alexandru I. Tomescu<\/em>, Fast, Flexible, and Exact Minimum Flow Decompositions via ILP<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Chirag Jain, Daniel Gibney and Sharma V. Thankachan<\/em>, Co-linear Chaining with Overlaps and Gap Costs<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Daniel Gibney, Sharma V. Thankachan and Srinivas Aluru<\/em>, The Complexity of Approximate Pattern Matching on De Bruijn Graphs<\/span><\/p><p>12:00pm &#8211; 13:30pm <strong>Lunch Break<\/strong><\/p><p>13:30pm &#8211; 14:30pm <strong>Talks (Molecular structure)<\/strong><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Nathan Guerin, Teresa Kaserer and Bruce Donald<\/em>, Resistor: an Algorithm for Predicting Resistance Mutations using Pareto Optimization over Multistate Protein Design and Mutational Signatures<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Zheng Dai, Sachit Saksena, Geraldine Horny, Christine Banholzer, Stefan Ewert and David Gifford<\/em>, Ultra high diversity factorizable libraries for efficient therapeutic discovery<\/span><\/p><p style=\"padding-left: 40px;\">[PT] <span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><em>Hanwen Xu and Sheng Wang<\/em>, ProTranslator: zero-shot protein function prediction using textual description<\/span><\/p><p>14:30pm &#8211; 15:30pm <strong>Keynote Talk<\/strong><\/p><p style=\"padding-left: 40px;\"><span data-sheets-value=\"{\" data-sheets-userformat=\"{\"><a href=\"https:\/\/www.regina.csail.mit.edu\/\"><span style=\"text-decoration: underline;\"><em>Regina Barzilay<\/em><\/span><\/a>, Infusing Biology into Molecular Models for Drug Discovery<\/span><\/p><p>15:30pm &#8211; 15:50pm <b>Awards Ceremony &amp; Closing Remarks<\/b><\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-5ccc47e elementor-widget elementor-widget-spacer\" data-id=\"5ccc47e\" data-element_type=\"widget\" data-widget_type=\"spacer.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<div class=\"elementor-spacer\">\n\t\t\t<div class=\"elementor-spacer-inner\"><\/div>\n\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-ad68fc2 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"ad68fc2\" data-element_type=\"section\" data-settings=\"{&quot;background_background&quot;:&quot;classic&quot;}\">\n\t\t\t\t\t\t\t<div class=\"elementor-background-overlay\"><\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-4bef2cc\" data-id=\"4bef2cc\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t\t\t<div class=\"elementor-element elementor-element-98e84ef elementor-widget elementor-widget-text-editor\" data-id=\"98e84ef\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<p style=\"text-align: center;\"><strong><span style=\"color: #ffcd00;\">RECOMB 2022, LA JOLLA, CA, USA, MAY 22-25, 2022<\/span><\/strong><\/p>\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-81421ea elementor-widget elementor-widget-text-editor\" data-id=\"81421ea\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-38b98c4 elementor-widget elementor-widget-text-editor\" data-id=\"38b98c4\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<p><strong><span style=\"color: #ffcd00;\">Email: recomb2022@ucsd.edu<\/span><\/strong><\/p>\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-35ccbf1 elementor-align-center elementor-widget elementor-widget-button\" data-id=\"35ccbf1\" data-element_type=\"widget\" data-widget_type=\"button.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<div class=\"elementor-button-wrapper\">\n\t\t\t<a href=\"https:\/\/twitter.com\/recomb2022\" class=\"elementor-button-link elementor-button elementor-size-sm\" role=\"button\">\n\t\t\t\t\t\t<span class=\"elementor-button-content-wrapper\">\n\t\t\t\t\t\t\t<span class=\"elementor-button-icon elementor-align-icon-right\">\n\t\t\t\t<i aria-hidden=\"true\" class=\"fab fa-twitter\"><\/i>\t\t\t<\/span>\n\t\t\t\t\t\t<span class=\"elementor-button-text\">Follow us on<\/span>\n\t\t<\/span>\n\t\t\t\t\t<\/a>\n\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-4f33b88 elementor-widget elementor-widget-text-editor\" data-id=\"4f33b88\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<p style=\"text-align: center;\"><span style=\"color: #ffffff;\">Copyright \u00a9 RECOMB 2022 Organizing Committee | Theme: Astra | Image: from iStock | Website editor: Kaiyuan Zhu, Mercedes Luangamath, Glenn Tesler<\/span><\/p>\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>RECOMB 2022 The 26th Annual International Conference on Research in Computational Molecular BiologyLa Jolla, USA, May 22-25, 2022 Conference Program Register Now All times US Pacific Time (PDT);&nbsp; [PT] for proceedings talk, [HT] for highlights talk; [PT] takes 20 minutes, [HT] takes 15 minutesLink to online proceedings Sunday May 22, 2022 Monday May 23, 2022 &hellip;<\/p>\n<p class=\"read-more\"> <a class=\"\" href=\"https:\/\/recomb2022.net\/program\/\"> <span class=\"screen-reader-text\">Program<\/span> Read More &raquo;<\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"nf_dc_page":"","site-sidebar-layout":"no-sidebar","site-content-layout":"page-builder","ast-global-header-display":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"disabled","ast-breadcrumbs-content":"","ast-featured-img":"disabled","footer-sml-layout":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":""},"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v19.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Program - Recomb 2022<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/recomb2022.net\/program\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Program - Recomb 2022\" \/>\n<meta property=\"og:description\" content=\"RECOMB 2022 The 26th Annual International Conference on Research in Computational Molecular BiologyLa Jolla, USA, May 22-25, 2022 Conference Program Register Now All times US Pacific Time (PDT);&nbsp; 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[PT] for proceedings talk, [HT] for highlights talk; [PT] takes 20 minutes, [HT] takes 15 minutesLink to online proceedings Sunday May 22, 2022 Monday May 23, 2022 &hellip; Program Read More &raquo;","og_url":"https:\/\/recomb2022.net\/program\/","og_site_name":"Recomb 2022","article_modified_time":"2022-05-24T00:18:36+00:00","twitter_card":"summary_large_image","twitter_misc":{"Est. reading time":"15 minutes"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/recomb2022.net\/program\/","url":"https:\/\/recomb2022.net\/program\/","name":"Program - Recomb 2022","isPartOf":{"@id":"https:\/\/recomb2022.net\/#website"},"datePublished":"2022-03-22T22:48:14+00:00","dateModified":"2022-05-24T00:18:36+00:00","breadcrumb":{"@id":"https:\/\/recomb2022.net\/program\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/recomb2022.net\/program\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/recomb2022.net\/program\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/recomb2022.net\/"},{"@type":"ListItem","position":2,"name":"Program"}]},{"@type":"WebSite","@id":"https:\/\/recomb2022.net\/#website","url":"https:\/\/recomb2022.net\/","name":"Recomb 2022","description":"","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/recomb2022.net\/?s={search_term_string}"},"query-input":"required name=search_term_string"}],"inLanguage":"en-US"}]}},"_links":{"self":[{"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/pages\/2955"}],"collection":[{"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/comments?post=2955"}],"version-history":[{"count":5,"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/pages\/2955\/revisions"}],"predecessor-version":[{"id":4557,"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/pages\/2955\/revisions\/4557"}],"wp:attachment":[{"href":"https:\/\/recomb2022.net\/wp-json\/wp\/v2\/media?parent=2955"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}